STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ39912.1ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (807 aa)    
Predicted Functional Partners:
KJJ39911.1
DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.987
KJJ39725.1
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.965
KJJ38817.1
DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.897
KJJ39631.1
3'-5' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.780
KJJ38709.1
mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.772
KJJ39480.1
DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.752
KJJ39547.1
DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.742
KJJ39030.1
Metallo-beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.724
KJJ39086.1
Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.720
KJJ37827.1
DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.708
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.