Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJJ39970.1Serine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)    
Predicted Functional Partners:
KJJ39967.1
Homoserine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.975
KJJ39969.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.973
KJJ37920.1
N-(5'-phosphoribosyl)anthranilate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.938
KJJ38136.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.937
KJJ37709.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.912
KJJ39605.1
Aminotransferase class IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.905
KJJ38262.1
Branched-chain amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.905
KJJ37844.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.900
KJJ38899.1
Serine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.887
KJJ39239.1
Threonine aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.878
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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