STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ40122.1S-adenosylmethionine tRNA ribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)    
Predicted Functional Partners:
tgt
Queuine tRNA-ribosyltransferase; Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.993
KJJ39775.1
ATP-dependent DNA helicase RuvB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.752
KJJ39776.1
Epoxyqueuosine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.750
KJJ39779.1
ATP-dependent DNA helicase RuvA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.680
KJJ37994.1
Preprotein translocase subunit SecD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.556
KJJ37978.1
5,10-methylene-tetrahydrofolate cyclohydrolase; Catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.551
KJJ38551.1
Ribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.542
KJJ39983.1
3-phosphoshikimate 1-carboxyvinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.507
KJJ39981.1
Pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.504
KJJ37666.1
UDP-diphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.486
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.