STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ39244.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (919 aa)    
Predicted Functional Partners:
KJJ39242.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.953
KJJ39243.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.949
KJJ39245.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.734
KJJ39509.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.703
KJJ39368.1
Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.582
KJJ39062.1
Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.582
KJJ38481.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.575
KJJ37263.1
Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.575
KJJ39784.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.554
KJJ37808.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.549
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.