STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ39262.1RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)    
Predicted Functional Partners:
KJJ37520.1
50S ribosomal protein L10; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.972
KJJ40025.1
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.965
KJJ40040.1
50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.964
KJJ40028.1
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.954
KJJ40031.1
50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.945
KJJ39454.1
methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.940
KJJ39097.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.924
KJJ38119.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.924
KJJ37954.1
ATP-dependent RNA helicase RhlE; This helicase is not essential cell growth; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.924
KJJ40128.1
50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.876
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.