Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KJJ39281.1Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)    
Predicted Functional Partners:
KJJ39282.1
Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.913
KJJ38778.1
Ferrochelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.858
KJJ38773.1
Protoporphyrinogen IX oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.837
KJJ39215.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.831
KJJ38831.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.831
KJJ38584.1
Aerotolerance regulator BatA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.831
KJJ38585.1
BatB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.831
KJJ39618.1
Porphobilinogen deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.482
KJJ37530.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.433
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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