Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KJJ39304.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (156 aa)    
Predicted Functional Partners:
KJJ38435.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.990
KJJ37679.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.990
KJJ39038.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.962
KJJ37351.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.948
KJJ38772.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.941
KJJ37651.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.920
KJJ39903.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.916
KJJ39942.1
Tungsten formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.896
KJJ39166.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.896
KJJ38073.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.896
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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