Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJJ39305.1Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)    
Predicted Functional Partners:
KJJ39722.1
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.713
KJJ39321.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.711
KJJ38386.1
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.710
KJJ39463.1
30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.707
KJJ40029.1
30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.705
KJJ40032.1
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.705
KJJ39874.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.647
KJJ39775.1
ATP-dependent DNA helicase RuvB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.644
KJJ39779.1
ATP-dependent DNA helicase RuvA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.641
KJJ37855.1
Crossover junction endodeoxyribonuclease RuvC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.640
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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