STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ39308.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)    
Predicted Functional Partners:
KJJ38407.1
Rod shape-determining protein MreB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.960
secA
Preprotein translocase subunit SecA; Functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have [...]
  
   0.839
KJJ40025.1
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.833
KJJ40028.1
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.833
KJJ40031.1
50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.833
KJJ39306.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KJJ39307.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KJJ39723.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.713
KJJ39462.1
50S ribosomal protein L9; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.712
KJJ37726.1
50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.706
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.