STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ39494.1rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
KJJ38316.1
Ribosome-associated protein IOJAP; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.805
KJJ37725.1
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.801
KJJ39723.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.799
KJJ40047.1
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.795
KJJ40041.1
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.789
KJJ38820.1
tRNA modification GTPase MnmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.784
KJJ37518.1
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.777
KJJ40128.1
50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.766
KJJ40023.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.761
KJJ39492.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.737
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.