Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJJ39548.1LOG family protein YvdD; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)    
Predicted Functional Partners:
KJJ39549.1
Glutamine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.932
KJJ39547.1
DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.554
KJJ39674.1
Ribonucleoside-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.476
KJJ37398.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.440
KJJ39550.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.430
KJJ37807.1
Thymidylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.424
KJJ37280.1
Adenylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.411
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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