Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KJJ38630.1Derived by automated computational analysis using gene prediction method: Protein Homology. (735 aa)    
Predicted Functional Partners:
KJJ38387.1
Polynucleotide phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.845
KJJ40032.1
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.819
KJJ40020.1
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.813
KJJ39463.1
30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.810
KJJ40019.1
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.809
KJJ38386.1
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.808
KJJ40044.1
30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.807
KJJ40046.1
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.806
KJJ40045.1
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.793
KJJ40036.1
30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.785
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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