Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
KJJ38631.1Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)    
Predicted Functional Partners:
KJJ38630.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.681
KJJ39849.1
Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
KJJ38552.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.656
KJJ38097.1
N-acetyl-gamma-glutamyl-phosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.616
KJJ39814.1
Acetoin utilization protein acuB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.598
KJJ38687.1
TPR domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.596
KJJ38591.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.576
KJJ38314.1
Orotate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.568
KJJ40127.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
KJJ39994.1
S-adenosyl-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.559
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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