Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJJ38694.1ATP F0F1 synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)    
Predicted Functional Partners:
KJJ38690.1
ATP synthase F0 subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KJJ38692.1
ATP F0F1 synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
KJJ38693.1
ATP synthase subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KJJ38695.1
ATP F0F1 synthase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
KJJ38691.1
ATP synthase F0 subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
KJJ37710.1
ATP synthase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.998
KJJ37711.1
ATP synthase subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
KJJ38923.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.978
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.937
KJJ38317.1
Peptidase M41; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.927
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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