STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ38711.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (834 aa)    
Predicted Functional Partners:
KJJ38712.1
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.955
KJJ38709.1
mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.953
KJJ38710.1
ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.951
KJJ38713.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.779
KJJ37698.1
DNA repair protein RadA; Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.602
KJJ38708.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
KJJ39640.1
Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.458
KJJ38169.1
Ribonuclease Z; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.417
KJJ37633.1
DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.406
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.