STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ38719.1RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (716 aa)    
Predicted Functional Partners:
KJJ40129.1
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.925
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.880
KJJ39544.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.877
KJJ37553.1
Lysine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.861
KJJ37496.1
Tetratricopeptide repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.842
KJJ40089.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.828
KJJ39516.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.828
KJJ39152.1
Tetratricopeptide repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.828
KJJ38687.1
TPR domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.828
KJJ38265.1
Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.828
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.