Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJJ38262.1Branched-chain amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)    
Predicted Functional Partners:
KJJ39967.1
Homoserine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.960
KJJ39970.1
Serine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.905
KJJ39166.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.874
KJJ38900.1
3-methyl-2-oxobutanoate hydroxymethyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.852
KJJ37575.1
Leucine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.845
KJJ39605.1
Aminotransferase class IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.837
KJJ37709.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.837
KJJ39976.1
Cytochrome C4; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.834
KJJ37844.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.832
KJJ37568.1
hydroxymethylglutaryl-CoA lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.787
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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