STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ38307.1Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)    
Predicted Functional Partners:
KJJ39069.1
Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.968
KJJ39109.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.968
KJJ40047.1
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.930
KJJ38641.1
rRNA maturation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.899
KJJ38068.1
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.875
KJJ40129.1
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.859
KJJ40032.1
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.830
KJJ39925.1
Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.757
KJJ38757.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.757
KJJ37907.1
Rhodanese; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.757
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.