Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJJ38308.1Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)    
Predicted Functional Partners:
KJJ38559.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.800
KJJ39544.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
KJJ38307.1
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.644
KJJ39099.1
Deoxyribonucleotide triphosphate pyrophosphatase; Hydrolyzes non-standard nucleotides such as xanthine and inosine; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.619
KJJ38842.1
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.614
KJJ39130.1
Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.593
KJJ38673.1
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.572
KJJ38727.1
6-phosphogluconate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.572
KJJ38730.1
NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.572
KJJ38204.1
GDP-L-fucose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.572
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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