STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ38387.1Polynucleotide phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (744 aa)    
Predicted Functional Partners:
KJJ37717.1
Ribonuclease G; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.983
fusA
Elongation factor G; EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.966
KJJ39097.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.958
KJJ38119.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.958
KJJ37954.1
ATP-dependent RNA helicase RhlE; This helicase is not essential cell growth; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.958
rplB
50S ribosomal protein L2; One of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.944
KJJ37519.1
50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.931
eno
Enolase; Catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.915
KJJ39765.1
Transcription elongation factor NusA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.898
KJJ40034.1
50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.887
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.