STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJJ37637.1Ribosome maturation factor RimM; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)    
Predicted Functional Partners:
rpsP
30S ribosomal protein S16; Binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
KJJ40027.1
30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.969
KJJ39572.1
tRNA (guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.926
guaA
GMP synthase; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.913
KJJ39577.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.908
KJJ39721.1
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.905
KJJ39463.1
30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.893
KJJ39606.1
30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.893
KJJ39723.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.890
KJJ40019.1
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.887
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.