Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJJ37353.150S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology. (79 aa)    
Predicted Functional Partners:
KJJ37354.1
50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.997
KJJ37725.1
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.991
KJJ40035.1
30S ribosomal protein S14; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.990
KJJ39463.1
30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.989
KJJ38603.1
50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.989
KJJ38417.1
30S ribosomal protein S20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.989
KJJ39723.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.988
KJJ39606.1
30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.988
KJJ39577.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.987
KJJ38386.1
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.987
Your Current Organism:
Aequorivita vladivostokensis
NCBI taxonomy Id: 171194
Other names: A. vladivostokensis, Aequorivita vladivostokensis (Nedashkovskaya et al. 2003) Hahnke et al. 2016, JCM 11732, KMM 3516, NBRC 16718, Vitellibacter vladivostokensis, Vitellibacter vladivostokensis Nedashkovskaya et al. 2003
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