GCA_000746025_00223 protein (Thermoanaerosceptrum fracticalcis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GCA_000746025_00223

annotation not available (263 aa)

Predicted Functional Partners:

GCA_000746025_00222

0.999

GCA_000746025_00221

0.997

GCA_000746025_00224

0.989

GCA_000746025_02178

0.843

GCA_000746025_00228

0.827

GCA_000746025_00227

0.807

GCA_000746025_00225

0.783

GCA_000746025_00226

0.783

GCA_000746025_00692

0.761

GCA_000746025_02505

0.748

Your Current Organism:

Thermoanaerosceptrum fracticalcis

NCBI taxonomy Id: 1712410
Other names: ATCC TSD-12, Clostridiales bacterium DRI-13, DSM 100382, Peptococcaceae bacterium DRI-13, T. fracticalcis, strain DRI-13

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000746025_00221	GCA_000746025_00222	annotation not available	annotation not available	0.997
GCA_000746025_00221	GCA_000746025_00223	annotation not available	annotation not available	0.997
GCA_000746025_00221	GCA_000746025_00224	annotation not available	annotation not available	0.990
GCA_000746025_00221	GCA_000746025_00225	annotation not available	annotation not available	0.689
GCA_000746025_00221	GCA_000746025_00226	annotation not available	annotation not available	0.689
GCA_000746025_00221	GCA_000746025_00227	annotation not available	annotation not available	0.689
GCA_000746025_00221	GCA_000746025_00228	annotation not available	annotation not available	0.726
GCA_000746025_00221	GCA_000746025_02178	annotation not available	annotation not available	0.714
GCA_000746025_00221	GCA_000746025_02505	annotation not available	annotation not available	0.402
GCA_000746025_00222	GCA_000746025_00221	annotation not available	annotation not available	0.997
GCA_000746025_00222	GCA_000746025_00223	annotation not available	annotation not available	0.999
GCA_000746025_00222	GCA_000746025_00224	annotation not available	annotation not available	0.999
GCA_000746025_00222	GCA_000746025_00225	annotation not available	annotation not available	0.783
GCA_000746025_00222	GCA_000746025_00226	annotation not available	annotation not available	0.783
GCA_000746025_00222	GCA_000746025_00227	annotation not available	annotation not available	0.807
GCA_000746025_00222	GCA_000746025_00228	annotation not available	annotation not available	0.827
GCA_000746025_00222	GCA_000746025_00692	annotation not available	annotation not available	0.761
GCA_000746025_00222	GCA_000746025_02178	annotation not available	annotation not available	0.843
GCA_000746025_00222	GCA_000746025_02505	annotation not available	annotation not available	0.748
GCA_000746025_00223	GCA_000746025_00221	annotation not available	annotation not available	0.997