GCA_000746025_00479 protein (Thermoanaerosceptrum fracticalcis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GCA_000746025_00479

annotation not available (487 aa)

Predicted Functional Partners:

GCA_000746025_00469

0.998

GCA_000746025_00481

0.992

GCA_000746025_00019

0.990

GCA_000746025_00484

0.987

GCA_000746025_00470

0.986

GCA_000746025_00020

0.980

GCA_000746025_00031

0.977

GCA_000746025_00025

0.976

GCA_000746025_00036

0.976

GCA_000746025_00023

0.974

Your Current Organism:

Thermoanaerosceptrum fracticalcis

NCBI taxonomy Id: 1712410
Other names: ATCC TSD-12, Clostridiales bacterium DRI-13, DSM 100382, Peptococcaceae bacterium DRI-13, T. fracticalcis, strain DRI-13

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000746025_00019	GCA_000746025_00020	annotation not available	annotation not available	0.999
GCA_000746025_00019	GCA_000746025_00023	annotation not available	annotation not available	0.999
GCA_000746025_00019	GCA_000746025_00025	annotation not available	annotation not available	0.997
GCA_000746025_00019	GCA_000746025_00031	annotation not available	annotation not available	0.999
GCA_000746025_00019	GCA_000746025_00036	annotation not available	annotation not available	0.998
GCA_000746025_00019	GCA_000746025_00469	annotation not available	annotation not available	0.982
GCA_000746025_00019	GCA_000746025_00470	annotation not available	annotation not available	0.970
GCA_000746025_00019	GCA_000746025_00479	annotation not available	annotation not available	0.990
GCA_000746025_00019	GCA_000746025_00481	annotation not available	annotation not available	0.777
GCA_000746025_00019	GCA_000746025_00484	annotation not available	annotation not available	0.996
GCA_000746025_00020	GCA_000746025_00019	annotation not available	annotation not available	0.999
GCA_000746025_00020	GCA_000746025_00023	annotation not available	annotation not available	0.999
GCA_000746025_00020	GCA_000746025_00025	annotation not available	annotation not available	0.998
GCA_000746025_00020	GCA_000746025_00031	annotation not available	annotation not available	0.999
GCA_000746025_00020	GCA_000746025_00036	annotation not available	annotation not available	0.998
GCA_000746025_00020	GCA_000746025_00469	annotation not available	annotation not available	0.990
GCA_000746025_00020	GCA_000746025_00470	annotation not available	annotation not available	0.971
GCA_000746025_00020	GCA_000746025_00479	annotation not available	annotation not available	0.980
GCA_000746025_00020	GCA_000746025_00481	annotation not available	annotation not available	0.866
GCA_000746025_00020	GCA_000746025_00484	annotation not available	annotation not available	0.997