GCA_000746025_01002 protein (Thermoanaerosceptrum fracticalcis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GCA_000746025_01002

annotation not available (563 aa)

Predicted Functional Partners:

GCA_000746025_00433

0.818

GCA_000746025_03514

0.738

GCA_000746025_00985

0.713

GCA_000746025_01001

0.565

GCA_000746025_01042

0.530

GCA_000746025_01040

0.511

GCA_000746025_00166

0.493

GCA_000746025_00987

0.493

GCA_000746025_00988

0.493

GCA_000746025_03586

0.493

Your Current Organism:

Thermoanaerosceptrum fracticalcis

NCBI taxonomy Id: 1712410
Other names: ATCC TSD-12, Clostridiales bacterium DRI-13, DSM 100382, Peptococcaceae bacterium DRI-13, T. fracticalcis, strain DRI-13

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Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000746025_00166	GCA_000746025_00985	annotation not available	annotation not available	0.999
GCA_000746025_00166	GCA_000746025_00987	annotation not available	annotation not available	0.929
GCA_000746025_00166	GCA_000746025_00988	annotation not available	annotation not available	0.931
GCA_000746025_00166	GCA_000746025_01002	annotation not available	annotation not available	0.493
GCA_000746025_00166	GCA_000746025_01040	annotation not available	annotation not available	0.995
GCA_000746025_00166	GCA_000746025_01042	annotation not available	annotation not available	0.999
GCA_000746025_00166	GCA_000746025_03514	annotation not available	annotation not available	0.999
GCA_000746025_00166	GCA_000746025_03586	annotation not available	annotation not available	0.984
GCA_000746025_00433	GCA_000746025_00985	annotation not available	annotation not available	0.904
GCA_000746025_00433	GCA_000746025_01002	annotation not available	annotation not available	0.818
GCA_000746025_00433	GCA_000746025_01042	annotation not available	annotation not available	0.850
GCA_000746025_00433	GCA_000746025_03514	annotation not available	annotation not available	0.842
GCA_000746025_00985	GCA_000746025_00166	annotation not available	annotation not available	0.999
GCA_000746025_00985	GCA_000746025_00433	annotation not available	annotation not available	0.904
GCA_000746025_00985	GCA_000746025_00987	annotation not available	annotation not available	0.999
GCA_000746025_00985	GCA_000746025_00988	annotation not available	annotation not available	0.999
GCA_000746025_00985	GCA_000746025_01002	annotation not available	annotation not available	0.713
GCA_000746025_00985	GCA_000746025_01040	annotation not available	annotation not available	0.999
GCA_000746025_00985	GCA_000746025_01042	annotation not available	annotation not available	0.999
GCA_000746025_00985	GCA_000746025_03514	annotation not available	annotation not available	0.999