GCA_000746025_02645 protein (Thermoanaerosceptrum fracticalcis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GCA_000746025_02645

annotation not available (218 aa)

Predicted Functional Partners:

GCA_000746025_00460

0.997

GCA_000746025_01527

0.994

GCA_000746025_02644

0.992

GCA_000746025_01859

0.970

GCA_000746025_00459

0.965

GCA_000746025_00679

0.965

GCA_000746025_03277

0.926

GCA_000746025_01526

0.915

GCA_000746025_02042

0.894

GCA_000746025_02643

0.890

Your Current Organism:

Thermoanaerosceptrum fracticalcis

NCBI taxonomy Id: 1712410
Other names: ATCC TSD-12, Clostridiales bacterium DRI-13, DSM 100382, Peptococcaceae bacterium DRI-13, T. fracticalcis, strain DRI-13

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000746025_00459	GCA_000746025_00460	annotation not available	annotation not available	0.999
GCA_000746025_00459	GCA_000746025_00679	annotation not available	annotation not available	0.935
GCA_000746025_00459	GCA_000746025_01527	annotation not available	annotation not available	0.999
GCA_000746025_00459	GCA_000746025_02645	annotation not available	annotation not available	0.965
GCA_000746025_00459	GCA_000746025_03277	annotation not available	annotation not available	0.943
GCA_000746025_00460	GCA_000746025_00459	annotation not available	annotation not available	0.999
GCA_000746025_00460	GCA_000746025_00679	annotation not available	annotation not available	0.931
GCA_000746025_00460	GCA_000746025_01526	annotation not available	annotation not available	0.999
GCA_000746025_00460	GCA_000746025_02645	annotation not available	annotation not available	0.997
GCA_000746025_00460	GCA_000746025_03277	annotation not available	annotation not available	0.942
GCA_000746025_00679	GCA_000746025_00459	annotation not available	annotation not available	0.935
GCA_000746025_00679	GCA_000746025_00460	annotation not available	annotation not available	0.931
GCA_000746025_00679	GCA_000746025_01526	annotation not available	annotation not available	0.873
GCA_000746025_00679	GCA_000746025_01527	annotation not available	annotation not available	0.847
GCA_000746025_00679	GCA_000746025_01859	annotation not available	annotation not available	0.839
GCA_000746025_00679	GCA_000746025_02042	annotation not available	annotation not available	0.516
GCA_000746025_00679	GCA_000746025_02645	annotation not available	annotation not available	0.965
GCA_000746025_00679	GCA_000746025_03277	annotation not available	annotation not available	0.823
GCA_000746025_01526	GCA_000746025_00460	annotation not available	annotation not available	0.999
GCA_000746025_01526	GCA_000746025_00679	annotation not available	annotation not available	0.873