Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJZ40430.1 | SJZ43054.1 | SAMN02745154_00009 | SAMN02745154_00092 | DNA polymerase-1. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.714 |
SJZ40430.1 | SJZ45565.1 | SAMN02745154_00009 | SAMN02745154_00167 | DNA polymerase-1. | tRNA pseudouridine55 synthase; Belongs to the pseudouridine synthase TruB family. | 0.580 |
SJZ40430.1 | SJZ51707.1 | SAMN02745154_00009 | SAMN02745154_00389 | DNA polymerase-1. | Hypothetical protein. | 0.405 |
SJZ40430.1 | SJZ59839.1 | SAMN02745154_00009 | SAMN02745154_00575 | DNA polymerase-1. | ATPase components of ABC transporters with duplicated ATPase domains. | 0.508 |
SJZ40430.1 | fusA | SAMN02745154_00009 | SAMN02745154_00666 | DNA polymerase-1. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.694 |
SJZ40430.1 | topA | SAMN02745154_00009 | SAMN02745154_00391 | DNA polymerase-1. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.994 |
SJZ43054.1 | SJZ40430.1 | SAMN02745154_00092 | SAMN02745154_00009 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | DNA polymerase-1. | 0.714 |
SJZ43054.1 | SJZ51707.1 | SAMN02745154_00092 | SAMN02745154_00389 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Hypothetical protein. | 0.408 |
SJZ43054.1 | fusA | SAMN02745154_00092 | SAMN02745154_00666 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.565 |
SJZ43054.1 | topA | SAMN02745154_00092 | SAMN02745154_00391 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.806 |
SJZ45565.1 | SJZ40430.1 | SAMN02745154_00167 | SAMN02745154_00009 | tRNA pseudouridine55 synthase; Belongs to the pseudouridine synthase TruB family. | DNA polymerase-1. | 0.580 |
SJZ45565.1 | SJZ51707.1 | SAMN02745154_00167 | SAMN02745154_00389 | tRNA pseudouridine55 synthase; Belongs to the pseudouridine synthase TruB family. | Hypothetical protein. | 0.473 |
SJZ51692.1 | SJZ51707.1 | SAMN02745154_00388 | SAMN02745154_00389 | Hypothetical protein. | Hypothetical protein. | 0.452 |
SJZ51707.1 | SJZ40430.1 | SAMN02745154_00389 | SAMN02745154_00009 | Hypothetical protein. | DNA polymerase-1. | 0.405 |
SJZ51707.1 | SJZ43054.1 | SAMN02745154_00389 | SAMN02745154_00092 | Hypothetical protein. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.408 |
SJZ51707.1 | SJZ45565.1 | SAMN02745154_00389 | SAMN02745154_00167 | Hypothetical protein. | tRNA pseudouridine55 synthase; Belongs to the pseudouridine synthase TruB family. | 0.473 |
SJZ51707.1 | SJZ51692.1 | SAMN02745154_00389 | SAMN02745154_00388 | Hypothetical protein. | Hypothetical protein. | 0.452 |
SJZ51707.1 | SJZ59509.1 | SAMN02745154_00389 | SAMN02745154_00568 | Hypothetical protein. | Phosphonate transport system substrate-binding protein. | 0.481 |
SJZ51707.1 | SJZ59839.1 | SAMN02745154_00389 | SAMN02745154_00575 | Hypothetical protein. | ATPase components of ABC transporters with duplicated ATPase domains. | 0.430 |
SJZ51707.1 | SJZ66607.1 | SAMN02745154_00389 | SAMN02745154_00709 | Hypothetical protein. | Hypothetical protein. | 0.517 |
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