STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BTO28_11500Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)    
Predicted Functional Partners:
cinA
Competence/damage-inducible protein A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.
    
 0.724
OMP66569.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.693
OMP66661.1
LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.503
OMP67747.1
Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.432
OMP67011.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.432
OMP65819.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.432
OMP67452.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.426
OMP67694.1
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
  
  0.418
OMP68668.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.412
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
  0.411
Your Current Organism:
Domibacillus epiphyticus
NCBI taxonomy Id: 1714355
Other names: D. epiphyticus, DSM 100929, Domibacillus epiphyticus Verma et al. 2017, Domibacillus sp. SAB 38, KCTC 33830, MTCC 12575, strain SAB 38
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