STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUJ29251.1Hypothetical protein. (59 aa)    
Predicted Functional Partners:
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.874
CUJ29273.1
Hypothetical protein.
       0.874
CUJ27731.1
Hypothetical protein.
  
     0.608
CUJ29175.1
Stringent starvation protein B.
       0.551
CUJ22304.1
Hypothetical protein.
  
     0.532
CUI81915.1
Hypothetical protein.
  
     0.521
CUJ29197.1
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein.
       0.500
CUJ21903.1
Hypothetical protein.
  
     0.472
CUJ01283.1
Hypothetical protein.
  
     0.463
CUJ21881.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Thalassobius activus
NCBI taxonomy Id: 1715691
Other names: CECT 5113, LMG 29900, LMG:29900, T. activus, Thalassobius activus Pujalte et al. 2018, Thalassobius sp. CECT 5113, Thalassobius sp. CECT 5114, strain 11SM13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.