STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUJ86659.1Hypothetical protein. (135 aa)    
Predicted Functional Partners:
gatB
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
       0.708
CUK00638.1
Putative conserved small protein containing a coiled-coil domain.
  
     0.670
CUK14055.1
Chromosome segregation protein SMC.
  
     0.670
CUK11972.1
Flagellar hook-length control protein FliK.
  
     0.507
CUJ94354.1
Divergent polysaccharide deacetylase.
  
     0.499
CUK01419.1
tRNA(1-methyladenosine) methyltransferase.
  
     0.468
CUK00773.1
Family finger-like domain protein.
  
     0.467
CUK05605.1
Flagellar motor switch protein.
  
     0.464
yycG_1
Sensor histidine kinase YycG.
  
     0.456
CUK11964.1
Chemotactic signal-response protein CheL.
  
     0.440
Your Current Organism:
Ruegeria denitrificans
NCBI taxonomy Id: 1715692
Other names: CECT 5091, LMG 29896, LMG:29896, R. denitrificans, Ruegeria sp. CECT 5091, strain 5OM10
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