STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iorA_1Isoquinoline 1-oxidoreductase subunit alpha. (154 aa)    
Predicted Functional Partners:
iorB_1
Isoquinoline 1-oxidoreductase subunit beta.
 0.994
hcrA
4-hydroxybenzoyl-CoA reductase subunit alpha.
 0.987
iorB_2
Isoquinoline 1-oxidoreductase subunit beta.
 0.975
cutL_1
Carbon monoxide dehydrogenase large chain.
 0.927
mop
Aldehyde oxidoreductase.
 
  
  0.914
coxM_2
Carbon monoxide dehydrogenase medium chain.
 0.910
cutL_2
Carbon monoxide dehydrogenase large chain.
 0.874
xdhA
Xanthine dehydrogenase molybdenum-binding subunit.
 
  
  0.872
coxL
Carbon monoxide dehydrogenase large chain.
 
 0.857
coxM_1
Carbon monoxide dehydrogenase medium chain.
 0.856
Your Current Organism:
Ruegeria denitrificans
NCBI taxonomy Id: 1715692
Other names: CECT 5091, LMG 29896, LMG:29896, R. denitrificans, Ruegeria sp. CECT 5091, strain 5OM10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.