STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL47317.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (640 aa)    
Predicted Functional Partners:
HisI
phosphoribosyl-AMP cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.669
KPL44974.1
Proteasome assembly chaperone family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.637
KPL45743.1
Histone; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.630
KPL47316.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.620
KPL44745.1
Transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.605
alaS
alanine--tRNA ligase; Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.587
KPL47335.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.580
KPL45411.1
CCA-adding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.564
nac
5S ribosomal RNA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.534
KPL46614.1
tryptophanyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.521
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
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