STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PapAMP-polyphosphate phosphotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (503 aa)    
Predicted Functional Partners:
Ppk1
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.926
SurE
Stationary phase survival protein SurE; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.804
KPL45954.1
Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.754
GlgP
Alpha-glucan phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.654
PstA
Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.594
KPL45879.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.594
KPL46017.1
Phosphate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.554
KPL46534.1
B12-binding domain/radical SAM domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.474
KPL45968.1
YgiQ family radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.474
KPL46700.1
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.473
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
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