STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL47062.1Translation initiation factor IF-2B subunit delta; eIF-2BB; catalyzes the binding of GTP to IF2; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)    
Predicted Functional Partners:
KPL46645.1
Translation initiation factor IF-2 subunit alpha; eIF-2A; functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.975
KPL46354.1
Translation initiation factor IF-2 subunit gamma; eIF-2G; forms a ternary complex with GTP and initiator tRNA in the early steps of protein synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.949
KPL45931.1
Elongation factor Tu; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.949
KPL46237.1
Glucose-1-phosphate thymidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.909
KPL46240.1
Glucose-1-phosphate thymidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.909
KPL46275.1
Mannose-1-phosphate guanyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.909
KPL45520.1
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.909
KPL46835.1
Thymidine phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.805
RbcL
Ribulose 1,5-bisphosphate carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.764
KPL46612.1
Translation initiation factor IF-2 subunit beta; eIF-2B; functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.746
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
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