STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL47064.1Formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)    
Predicted Functional Partners:
TsaA
tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.980
FhcD
Formylmethanofuran--tetrahydromethanopterin formyltransferase; Catalyzes the transfer of a formyl group from formylmethanofuran to tetrahydromethanopterin tetrahydromethanopterin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.913
KPL47289.1
Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.712
KPL45187.1
Cobalamin biosynthesis protein CbiN; Catalyzes the ATP-dependent transport of cobalt; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.697
CdhA
acetyl-CoA decarbonylase/synthase complex subunit alpha; Part of a complex that catalyzes the cleavage of acetyl-CoA or autotrophic acetyl-CoA synthesis; forms a heterotetramer composed of two alpha and two epsilon chains; the entire ACDS complex is composed of (alpha(2)epsilon(2))(4)-beta(8)-(gamma(1)delta(1))(8); Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.687
KPL46811.1
Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.650
CdhB
acetyl-CoA synthase subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.650
KPL47291.1
Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.600
KPL47290.1
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.599
KPL44947.1
Formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.510
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
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