STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL46798.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)    
Predicted Functional Partners:
KPL47282.1
Digeranylgeranylglyceryl phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.951
KPL46193.1
Geranylgeranyl reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.908
KPL46049.1
Digeranylgeranylglycerophospholipid reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.908
KPL45610.1
Digeranylgeranylglycerophospholipid reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.908
KPL44977.1
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.908
TpiA
Triosephosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.740
KPL46797.1
Orotate phosphoribosyltransferase; Catalyzes the formation of orotidine monophosphate from 5-phosphoribosyl-1-pyrophosphate and orotate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.682
KPL46646.1
30S ribosomal protein S27; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.660
KPL46945.1
Ribonuclease HII; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.659
KPL45852.1
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.659
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
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