STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL46700.1ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)    
Predicted Functional Partners:
KPL46534.1
B12-binding domain/radical SAM domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.750
KPL45968.1
YgiQ family radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.750
KPL45940.1
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.552
KPL46089.1
NADH peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.511
KPL45713.1
N-ethylmaleimide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.511
KPL46790.1
Aerotolerance regulator BatA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.485
Pap
AMP-polyphosphate phosphotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.473
KPL46785.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.410
KPL46784.1
Part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.401
KPL45994.1
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.400
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.