STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL46182.1Ferredoxin thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)    
Predicted Functional Partners:
KPL46919.1
Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.784
KPL46183.1
tRNA CCA-pyrophosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.631
KPL46185.1
Formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.546
KPL46184.1
Formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
TrxA
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.482
cofG
FO synthase subunit 1; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis along with cofH; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.461
KPL46181.1
Disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.421
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
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