STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL46088.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)    
Predicted Functional Partners:
KPL46087.1
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.705
KPL46949.1
Ketoisovalerate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.666
KPL46086.1
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.654
AOB57_13695
PDZ domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.564
PstA
Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.518
ArgF
Ornithine carbamoyltransferase; Catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.490
KPL46951.1
acetyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.443
KPL46089.1
NADH peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.423
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.