KPL45877.1 protein (Methanosarcina flavescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KPL45877.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)

Predicted Functional Partners:

KPL45494.1

0.825

KPL46058.1

0.807

KPL46079.1

0.807

KPL45878.1

0.773

KPL46359.1

0.752

KPL44857.1

0.733

KPL47248.1

0.732

KPL45501.1

0.724

KPL45361.1

0.721

KPL47292.1

0.720

Your Current Organism:

Methanosarcina flavescens

NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPL44857.1	KPL45361.1	AOB57_13360	AOB57_09730	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL44857.1	KPL45494.1	AOB57_13360	AOB57_10475	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL44857.1	KPL45501.1	AOB57_13360	AOB57_10515	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S4e; The function of this ribosomal subunit is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL44857.1	KPL45877.1	AOB57_13360	AOB57_07720	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
KPL44857.1	KPL46058.1	AOB57_13360	AOB57_07350	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
KPL44857.1	KPL46079.1	AOB57_13360	AOB57_07355	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
KPL44857.1	KPL46359.1	AOB57_13360	AOB57_05975	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL44857.1	KPL47248.1	AOB57_13360	AOB57_00670	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S6; The function of this ribosomal subunit is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL44857.1	KPL47292.1	AOB57_13360	AOB57_00380	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL45361.1	KPL44857.1	AOB57_09730	AOB57_13360	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL45361.1	KPL45494.1	AOB57_09730	AOB57_10475	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL45361.1	KPL45501.1	AOB57_09730	AOB57_10515	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S4e; The function of this ribosomal subunit is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL45361.1	KPL45877.1	AOB57_09730	AOB57_07720	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
KPL45361.1	KPL46058.1	AOB57_09730	AOB57_07350	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
KPL45361.1	KPL46079.1	AOB57_09730	AOB57_07355	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
KPL45361.1	KPL46359.1	AOB57_09730	AOB57_05975	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL45361.1	KPL47248.1	AOB57_09730	AOB57_00670	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S6; The function of this ribosomal subunit is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL45361.1	KPL47292.1	AOB57_09730	AOB57_00380	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL45494.1	KPL44857.1	AOB57_10475	AOB57_13360	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KPL45494.1	KPL45361.1	AOB57_10475	AOB57_09730	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999

page 1 of 5

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About