STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL45781.1RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)    
Predicted Functional Partners:
KPL46431.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
KPL45779.1
RNA-binding protein; Involved in the 3' to 5' degradation of a variety of RNA species; forms a trimer of heterodimers (hexamer) with Rrp42; Rrp41 is the catalytically active subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KPL45780.1
Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KPL45941.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.985
KPL46483.1
Similar to yeast Dim2p protein that is essential for 40S ribosomal subunit; structural studies show binding to 3' end of 16S rRNA in complex with archaeal IF2 alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.966
KPL45939.1
Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.952
KPL47077.1
rRNA biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.950
KPL47248.1
30S ribosomal protein S6; The function of this ribosomal subunit is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.941
KPL45483.1
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.940
rpl7ae
50S ribosomal protein L7; Multifunctional protein; binds C/D boxes of sRNAs and guides RNA post-transcriptional modification; also binds KT-15 motif in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.936
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
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