STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL45759.1RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)    
Predicted Functional Partners:
KPL45734.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.701
rrmJ
23S rRNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.668
KPL45735.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.582
KPL46945.1
Ribonuclease HII; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.529
CysE
Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.528
MutS
DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.477
KPL46688.1
16S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.460
KPL45736.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
KPL45726.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.441
KPL46687.1
Modification methylase HemK; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.440
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.