STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL45494.130S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)    
Predicted Functional Partners:
KPL47292.1
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KPL47248.1
30S ribosomal protein S6; The function of this ribosomal subunit is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.999
KPL47249.1
Translation initiation factor IF-2; Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis; also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KPL47251.1
50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.999
rps28e
30S ribosomal protein S28; The function of S28E in the ribosome is unknown but the structure shows a variants OB-fold that is found in nucleic acid-binding proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.999
rpl7ae
50S ribosomal protein L7; Multifunctional protein; binds C/D boxes of sRNAs and guides RNA post-transcriptional modification; also binds KT-15 motif in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KPL47080.1
50S ribosomal protein L18e; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.999
KPL47015.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
KPL47016.1
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KPL47019.1
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
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