STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL44881.1Riboflavin kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)    
Predicted Functional Partners:
KPL47130.1
FAD synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.934
KPL47133.1
Catalyzes the formation of riboflavin and 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine from 6,7-dimethyl-8-(1-D-ribityl)lumazine; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.917
RibB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.818
KPL45941.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.684
KPL45852.1
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
PriS
DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
KPL45430.1
tRNA(Ile2) 2-agmatinylcytidine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.675
KPL46358.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
KPL46836.1
tRNA 2'-O-methylase; Catalyzes the S-adenosyl-methionine-dependent 2'-O-ribose methylation of C56 in tRNA transcripts; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
KPL46469.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
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