STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgdA_1peptidoglycan-N-acetylglucosamine deacetylase. (185 aa)    
Predicted Functional Partners:
OAH16165.1
Lactonase, 7-bladed beta-propeller.
 
     0.902
pgdA_2
peptidoglycan-N-acetylglucosamine deacetylase.
  
     0.771
pdaA
peptidoglycan-N-acetylmuramic acid deacetylase PdaA precursor.
  
     0.760
pdaC
peptidoglycan-N-acetylmuramic acid deacetylase PdaC.
  
     0.743
OAH15101.1
Acyltransferase family protein.
  
 
 0.643
OAH16163.1
EF hand.
       0.561
echA8_1
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.561
OAH14211.1
AP-4-A phosphorylase.
       0.561
lppS_2
Putative L,D-transpeptidase LppS precursor.
       0.542
pgaC_1
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
 
 
0.525
Your Current Organism:
Streptomyces jeddahensis
NCBI taxonomy Id: 1716141
Other names: DSM 101878, LMG 29545, LMG:29545, NCCB 100603, S. jeddahensis, Streptomyces jeddahensis Rottig et al. 2017, Streptomyces sp. G25(2015), strain G25
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