STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK09626.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (434 aa)    
Predicted Functional Partners:
AMK09624.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
AMK09625.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.796
AMK09622.1
Host-nuclease inhibitor protein Gam; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
AMK09628.1
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.775
AMK09627.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
AMK09623.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.762
AMK09629.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.737
AMK09618.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.649
AMK09619.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.617
AMK09620.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.617
Your Current Organism:
Pseudodesulfovibrio indicus
NCBI taxonomy Id: 1716143
Other names: DSM 101483, Desulfovibrio indicus, Desulfovibrio sp. J2, MCCC 1A01867, P. indicus, Pseudodesulfovibrio indicus Cao et al. 2016, strain J2
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