STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK10648.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (416 aa)    
Predicted Functional Partners:
AMK09692.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.678
AMK10469.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.665
AMK10597.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.665
AMK10598.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.665
AMK11666.1
Protein tolB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.625
AMK12628.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.625
AMK10301.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.592
AMK10263.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 
 0.540
AMK12912.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.540
AMK11910.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 
 0.540
Your Current Organism:
Pseudodesulfovibrio indicus
NCBI taxonomy Id: 1716143
Other names: DSM 101483, Desulfovibrio indicus, Desulfovibrio sp. J2, MCCC 1A01867, P. indicus, Pseudodesulfovibrio indicus Cao et al. 2016, strain J2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.