STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK10927.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)    
Predicted Functional Partners:
AMK10928.1
Disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.700
AMK10929.1
Methyl-viologen-reducing hydrogenase subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.679
AMK10930.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.632
AMK10931.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.607
AMK10933.1
Disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.512
AMK10932.1
Heterodisulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.507
AMK10934.1
Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.460
AMK11318.1
Competence protein ComEC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.427
Your Current Organism:
Pseudodesulfovibrio indicus
NCBI taxonomy Id: 1716143
Other names: DSM 101483, Desulfovibrio indicus, Desulfovibrio sp. J2, MCCC 1A01867, P. indicus, Pseudodesulfovibrio indicus Cao et al. 2016, strain J2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.