STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnfDElectron transporter RnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. (325 aa)    
Predicted Functional Partners:
rnfE
Electron transport complex subunit RsxE; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
 
 
 0.994
rnfG
Electron transporter RnfG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
 
 
 0.994
AMK11596.1
Electron transporter RnfC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
rnfA
Electron transport complex subunit A; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
 
 
 0.989
AMK12782.1
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.970
rnfG-2
Electron transporter RnfG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
 
 
 0.970
rnfE-2
Electron transport complex subunit RsxE; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
 
 
 0.970
rnfA-2
Electron transport complex subunit A; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
 
 
 0.947
rnfB
Electron transporter RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.935
AMK12772.1
Thiamine biosynthesis protein ApbE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.818
Your Current Organism:
Pseudodesulfovibrio indicus
NCBI taxonomy Id: 1716143
Other names: DSM 101483, Desulfovibrio indicus, Desulfovibrio sp. J2, MCCC 1A01867, P. indicus, Pseudodesulfovibrio indicus Cao et al. 2016, strain J2
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