AMK12113.1 protein (Pseudodesulfovibrio indicus)

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Predicted Interactions

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AMK12113.1

Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (648 aa)

Predicted Functional Partners:

AMK12112.1

0.988

AMK12111.1

0.979

AMK12114.1

0.973

AMK10435.1

0.846

AMK10436.1

0.831

AMK10742.1

0.783

AMK11087.1

0.758

AMK11086.1

0.756

AMK10373.1

0.755

AMK09812.1

0.709

Your Current Organism:

Pseudodesulfovibrio indicus

NCBI taxonomy Id: 1716143
Other names: DSM 101483, Desulfovibrio indicus, Desulfovibrio sp. J2, MCCC 1A01867, P. indicus, Pseudodesulfovibrio indicus Cao et al. 2016, strain J2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMK09812.1	AMK10436.1	AWY79_01165	AWY79_04555	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Menaquinol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AMK09812.1	AMK12111.1	AWY79_01165	AWY79_13820	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
AMK09812.1	AMK12113.1	AWY79_01165	AWY79_13830	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.709
AMK09812.1	AMK12114.1	AWY79_01165	AWY79_13835	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AMK10373.1	AMK10436.1	AWY79_04210	AWY79_04555	Heterodisulfide reductase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Menaquinol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
AMK10373.1	AMK12111.1	AWY79_04210	AWY79_13820	Heterodisulfide reductase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AMK10373.1	AMK12113.1	AWY79_04210	AWY79_13830	Heterodisulfide reductase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.755
AMK10373.1	AMK12114.1	AWY79_04210	AWY79_13835	Heterodisulfide reductase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AMK10435.1	AMK10436.1	AWY79_04550	AWY79_04555	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Menaquinol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AMK10435.1	AMK12111.1	AWY79_04550	AWY79_13820	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AMK10435.1	AMK12113.1	AWY79_04550	AWY79_13830	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.846
AMK10435.1	AMK12114.1	AWY79_04550	AWY79_13835	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AMK10436.1	AMK09812.1	AWY79_04555	AWY79_01165	Menaquinol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AMK10436.1	AMK10373.1	AWY79_04555	AWY79_04210	Menaquinol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heterodisulfide reductase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
AMK10436.1	AMK10435.1	AWY79_04555	AWY79_04550	Menaquinol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AMK10436.1	AMK11086.1	AWY79_04555	AWY79_08155	Menaquinol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
AMK10436.1	AMK11087.1	AWY79_04555	AWY79_08160	Menaquinol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
AMK10436.1	AMK12112.1	AWY79_04555	AWY79_13825	Menaquinol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
AMK10436.1	AMK12113.1	AWY79_04555	AWY79_13830	Menaquinol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.831
AMK10436.1	AMK12114.1	AWY79_04555	AWY79_13835	Menaquinol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799

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Network Stats

number of nodes:

11

number of edges:

31

average node degree:

5.64

avg. local clustering coefficient:

0.856

expected number of edges:

12

PPI enrichment p-value:

6.82e-06

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009063

Cellular amino acid catabolic process

4 of 38

1.72

1.4

0.0011

GO:0009064

Glutamine family amino acid metabolic process

4 of 46

1.64

1.35

0.0011

GO:0006536

Glutamate metabolic process

3 of 17

1.95

1.33

0.0024

GO:1901605

Alpha-amino acid metabolic process

5 of 137

1.26

1.03

0.0018

GO:0006520

Cellular amino acid metabolic process

6 of 190

1.2

1.02

0.0011

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008483

Transaminase activity

4 of 16

2.1

2.15

5.31e-05

GO:0030170

Pyridoxal phosphate binding

3 of 32

1.67

0.94

0.0122

GO:0016810

Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

3 of 53

1.45

0.73

0.0288

GO:0003824

Catalytic activity

11 of 2044

0.43

0.33

0.0079

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4892

Biosynthesis of amino acids, and Carbon metabolism

8 of 198

1.31

1.75

4.55e-07

CL:5143

Mixed, incl. Glutamine family amino acid metabolic process, and Glutathione metabolic process

5 of 71

1.55

1.65

8.76e-05

CL:5145

Glutamine family amino acid metabolic process, and Glutathione metabolic process

4 of 38

1.72

1.62

0.00029

CL:5147

Glutamine family amino acid biosynthetic process, and Glutamine family amino acid catabolic process

3 of 29

1.72

1.11

0.0053

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00220

Arginine biosynthesis

3 of 19

1.9

1.58

0.00061

map00250

Alanine, aspartate and glutamate metabolism

3 of 33

1.66

1.28

0.0018

map00280

Valine, leucine and isoleucine degradation

2 of 23

1.64

0.73

0.0362

map01210

2-Oxocarboxylic acid metabolism

2 of 30

1.53

0.69

0.0396

map00330

Arginine and proline metabolism

2 of 32

1.5

0.68

0.0396

(more ...)

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-71291

Metabolism of amino acids and derivatives

6 of 156

1.29

1.27

0.00020

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0032

Aminotransferase

4 of 14

2.16

2.62

5.51e-06

KW-0808

Transferase

6 of 507

0.77

0.49

0.0205

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR015424

Pyridoxal phosphate-dependent transferase

3 of 29

1.72

0.69

0.0465

IPR015422

Pyridoxal phosphate-dependent transferase, small domain

3 of 27

1.75

0.69

0.0465

IPR015421

Pyridoxal phosphate-dependent transferase, major domain

3 of 29

1.72

0.69

0.0465

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